Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs10901937 chr11:50385005 G/A cg15704280 chr7:45808275 SEPT13 -1.02 -24.5 -0.78 3.24E-80 Box Plot
BLCA rs10901938 chr11:50388451 C/G cg15704280 chr7:45808275 SEPT13 -1.02 -24.51 -0.78 3.04E-80 Box Plot
BLCA rs10934742 chr3:125740788 C/T cg26321609 chr3:123680480 CCDC14 -1.18 -26.98 -0.81 2.53E-90 Box Plot
BLCA rs11245645 chr11:50334441 C/T cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs11245654 chr11:50371187 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.68 -0.78 6.09E-81 Box Plot
BLCA rs11245676 chr11:50414030 C/T cg15704280 chr7:45808275 SEPT13 -1.02 -24.1 -0.78 1.53E-78 Box Plot
BLCA rs11494317 chr11:50340960 C/A cg15704280 chr7:45808275 SEPT13 -1.04 -24.17 -0.78 7.82E-79 Box Plot
BLCA rs11494364 chr11:50287468 G/A cg15704280 chr7:45808275 SEPT13 -1.02 -24.62 -0.78 1.08E-80 Box Plot
BLCA rs11518814 chr11:50354894 T/C cg15704280 chr7:45808275 SEPT13 -1.03 -24.52 -0.78 2.64E-80 Box Plot
BLCA rs11523530 chr11:50328171 T/C cg15704280 chr7:45808275 SEPT13 -1.03 -24.61 -0.78 1.18E-80 Box Plot
BLCA rs11915239 chr3:125697468 A/G cg26321609 chr3:123680480 CCDC14 -1.18 -24.19 -0.78 6.44E-79 Box Plot
BLCA rs11919548 chr3:125758932 C/T cg26321609 chr3:123680480 CCDC14 -1.15 -26.07 -0.8 1.18E-86 Box Plot
BLCA rs11919781 chr3:125759480 G/A cg26321609 chr3:123680480 CCDC14 -1.15 -26.07 -0.8 1.18E-86 Box Plot
BLCA rs11925047 chr3:125698944 G/A cg26321609 chr3:123680480 CCDC14 -1.18 -26.57 -0.81 1.19E-88 Box Plot
BLCA rs11925965 chr3:125740393 C/T cg26321609 chr3:123680480 CCDC14 -1.19 -26.9 -0.81 5.51E-90 Box Plot